PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790875.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 609aa    MW: 65843.7 Da    PI: 6.9351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.9e-31254311260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_009790875.1 254 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 311
                     8****************************************.***************85 PP
2WRKY106.11.8e-33425483159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009790875.1 425 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 483
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-26244312IPR003657WRKY domain
PROSITE profilePS5081122.435248312IPR003657WRKY domain
SuperFamilySSF1182902.48E-24250312IPR003657WRKY domain
SMARTSM007743.4E-33253311IPR003657WRKY domain
PfamPF031069.5E-24254310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37410485IPR003657WRKY domain
SuperFamilySSF1182902.48E-29417485IPR003657WRKY domain
PROSITE profilePS5081138.825420485IPR003657WRKY domain
SMARTSM007743.1E-39425484IPR003657WRKY domain
PfamPF031063.7E-26426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEDSQSQSQS HYFQQYSHSS PLPSINESSE QQLKISSCDA SAVGSNSSRG AKYKLMSPAK  60
LPISRSTCIT IPPGLSPSSF LESPVLLSNI KAEPSPTTGS FSKFQLMQGS SGSAAFSFMR  120
SCSSGNAYGE TTGEFEFKFA IGSSSTSGSL AKEAATFAGL NQQQSEPLNQ IQDRCLSQSL  180
APSALVKCEM PNSKEVSLPA PVSLDASSFS TAAADPAAID NEEKSQRGHS NPSSQGSHAD  240
NRDVSSITAE RSSDDGYNWR KYGQKLVKGS EFPRSYYKCT YPNCEVKKIF ERSPEGQITE  300
IVYKGSHDHP KPQPSRRFTP GALMSIQEDR SEKEASFTGQ EDKFNANAYT SNIEPSSTPV  360
SPRPADDDGL EGAVSQLQSA SDQLDEDDPF AKRRKMDGGM DITPVVKPIR EPRVVVQTVS  420
EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK AVITTYEGKH  480
NHDVPTARNN SHEMAGSAPV TGSSRVRAEE NGSISLDLGV GIGYGMENRS NGQLYTRPAE  540
SVRNQVQVSS SSVMVVQPAA VAASYGIVNG GMSRFGSIDN RIQGTGFESL PLQPSTQCHQ  600
NYGRIILGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37254485877Probable WRKY transcription factor 4
2lex_A2e-37254485877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111310.0AB711131.1 Nicotiana benthamiana NbWRKY10 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790875.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-158WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1U7XWK30.0A0A1U7XWK3_NICSY; probable WRKY transcription factor 20 isoform X1
STRINGXP_009790875.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-154WRKY family protein