PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790800.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 411aa MW: 44618.4 Da PI: 8.2151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.7e-05	300	338	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009790800.1 300 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 338 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-11	298	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-5	298	342	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-9	302	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MEPANLHHHH QQYHQLQFQD QLPLGISPNS SSSNSSYGDA TNTTHTWTPC TILNSAGTSL 60 SSYSSGAINT TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSSQLV KQENSLDSYP 120 RFTQMLKSPS NIEERELSDM NAKLLFGTLS NSGCQMINTG LQLYPGDHNL LYSSNSSSST 180 NNRGKFSQIY PTINVSNLNT INQASYLANS SSLDMNLQPL DLVNSSRYGG SFSQPYGLTN 240 HFQHSSSESP VDSSSSISAF SNGVPEAKRT SNILEPKAPQ NAPKKSRVDS RASCPPFKVR 300 KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ VETLSVPYMK SSRNKTSRSL 360 HGGGGEMNGS SEELKRDLRS RGLCLVPLSC LTYMTDGGGG VWPPPNFAGG T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MEPANLHHHH QQYHQLQFQD QLPLGISPNS SSSNSSYGDA TNTTHTWTPC TILNSAGTSL  60
SSYSSGAINT TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSSQLV KQENSLDSYP  120
RFTQMLKSPS NIEERELSDM NAKLLFGTLS NSGCQMINTG LQLYPGDHNL LYSSNSSSST  180
NNRGKFSQIY PTINVSNLNT INQASYLANS SSLDMNLQPL DLVNSSRYGG SFSQPYGLTN  240
HFQHSSSESP VDSSSSISAF SNGVPEAKRT SNILEPKAPQ NAPKKSRVDS RASCPPFKVR  300
KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ VETLSVPYMK SSRNKTSRSL  360
HGGGGEMNGS SEELKRDLRS RGLCLVPLSC LTYMTDGGGG VWPPPNFAGG T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790800.1	0.0	PREDICTED: transcription factor bHLH110
Refseq	XP_016468176.1	0.0	PREDICTED: transcription factor bHLH110-like
Swissprot	Q9SFZ3	3e-63	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1S3ZUV2	0.0	A0A1S3ZUV2_TOBAC; transcription factor bHLH110-like
TrEMBL	A0A1U7XWC3	0.0	A0A1U7XWC3_NICSY; transcription factor bHLH110
STRING	XP_009790800.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]