PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009790763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 659aa MW: 75344.8 Da PI: 6.5554 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.9 | 1.6e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++gkk+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v XP_009790763.1 6 LPPGFRFHPTDEELVAYYLKRKINGKKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 79****************************.99***************6434555777************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + + vg+kktLv+y+grap+g +tdWvmheyrl XP_009790763.1 100 S-QMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 *.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-62 | 4 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.061 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING KKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKRSLNG PKTGDVHYAS DRSSSIEIYS 180 EGRCEKYHDM EIRSHDYAMP SSSSSSSMAV HGSPMNVATP TPTPSDDKWN MQYLSNEAFS 240 FNNSTAHPIP NYGTLPYPPS KVNIALECAR LQHRFALPPL EIQDFPQVGY VDNKMPQSSF 300 LQSTNQTDIV EEILSVAQLA SQNLINQDSS WGGNSCAPVD DFSFLPPNNN RIHDLGSFHF 360 IEQLKEDQNV RSPDIGDFGE DFKSDRMVEN LRWIGMSDGD LEKTFLEDYK TVPIENVSAV 420 QRKENQFQGE DSGHYNSLNG FNETDTNNFS IGFGNDNLFD DGDMTDGLSN SSSFEMYEKI 480 EVNHGFFIAT RQAAKTFYHQ VTPSTTLRIH RNLVTVHDFP LYIGKISDST SIIPKERTFL 540 DNFIKKVTRP WTTTMRTLAG MIALLHTFFW ICFGGCLDEK GSKFEAKRGV SVNGECLMER 600 EEKKKAQEFK WYCYKQNKFS IPGKEEEKYC NVAVEKKWPY LTLVVALSTI WLHHIVPSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-54 | 2 | 133 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226509 | 3e-60 | AC226509.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0144P17, complete sequence. | |||
GenBank | HG975441 | 3e-60 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 3e-60 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790763.1 | 0.0 | PREDICTED: uncharacterized protein LOC104238166 | ||||
TrEMBL | A0A1U7XIR1 | 0.0 | A0A1U7XIR1_NICSY; uncharacterized protein LOC104238166 | ||||
STRING | XP_009790763.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1495 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-143 | NAC domain containing protein 28 |