PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790722.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 413aa MW: 45626.2 Da PI: 9.7429

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	181	203	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg F+ +nL+ H+ + H XP_009790722.1 181 ICSECGDIFTKLENLELHQAVrH 203 5******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	180	208	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	182	203	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.36E-23	205	412	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.9E-13	206	411	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MAKSKRNPSI KQSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK 60 IPKCEERGDN NKKCKKMKCS GSICSNTKVM HRPEPSPSPP KGRSCKNNGS TKVTLNNNNA 120 ISSFSSASSS SSFSLHSTSA PSTSPTTSSL RGMPFRKLSG CYECRMVVDP IARDPSLRST 180 ICSECGDIFT KLENLELHQA VRHAVSELGP EDTSRNIVEI IFQSSWLNKK TPVCKIDRIL 240 KIRNTPRTIS RFEEYRDGIK AKATNLPKKH PRCIADGNEL LRFHCTTFMC SLGLNGSSNL 300 CTVPNCNICT IIKNGFKLAT TDGTKKGILT TATSGKAHDS TRVVPDDDDD DNDKRAMLVC 360 RVIAGRVKKN LDGNLEEYDS IAGAAGVYSN LDELYVFNPK AILPCFVVIY KGF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MAKSKRNPSI KQSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK  60
IPKCEERGDN NKKCKKMKCS GSICSNTKVM HRPEPSPSPP KGRSCKNNGS TKVTLNNNNA  120
ISSFSSASSS SSFSLHSTSA PSTSPTTSSL RGMPFRKLSG CYECRMVVDP IARDPSLRST  180
ICSECGDIFT KLENLELHQA VRHAVSELGP EDTSRNIVEI IFQSSWLNKK TPVCKIDRIL  240
KIRNTPRTIS RFEEYRDGIK AKATNLPKKH PRCIADGNEL LRFHCTTFMC SLGLNGSSNL  300
CTVPNCNICT IIKNGFKLAT TDGTKKGILT TATSGKAHDS TRVVPDDDDD DNDKRAMLVC  360
RVIAGRVKKN LDGNLEEYDS IAGAAGVYSN LDELYVFNPK AILPCFVVIY KGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-98	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790722.1	0.0	PREDICTED: uncharacterized protein LOC104238136
TrEMBL	A0A1U7XF71	0.0	A0A1U7XF71_NICSY; uncharacterized protein LOC104238136
STRING	XP_009790722.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-103	C2H2-like zinc finger protein