PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790561.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 355aa    MW: 40694.1 Da    PI: 4.5429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_009790561.1 14 RGRWTEEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding43.76.2e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E+ +++++ + lG++ W++Ia++++ gRt++++k++w++
   XP_009790561.1  67 RGNITAAEEAIIIKLRATLGNR-WSLIAEYLP-GRTDNEIKNYWNS 110
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.501961IPR017930Myb domain
SuperFamilySSF466891.87E-2711108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
CDDcd001671.73E-81661No hitNo description
PROSITE profilePS5129422.87162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2365116IPR009057Homeodomain-like
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1267110IPR001005SANT/Myb domain
CDDcd001677.39E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRTPCCEKV GLKRGRWTEE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKNDLKRGNI TAAEEAIIIK LRATLGNRWS LIAEYLPGRT DNEIKNYWNS RLSRKVESLR  120
IPSDEKLPQA VVELAKNGTH QLNKQRRRRT SPSSKSIASN LSKPDQLVAE SEFSPNETVI  180
PMPSTPNIEK EVLSSTINIT TSSWQEYGNN IIASGNNIIE LDNDQMQWRD DIVLIDEDEE  240
LDQDFILSCL WNDEGENLEI IQHNNNNNNN NEKVSEEGGH DKIIVSDETK TLMGDWEYLW  300
ASHEEAEEEN NMSNNNYISS WPLWDSNDTA GLQQYCTNKA MVEIDPMQSE DHQHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-45HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790561.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U7XLS30.0A0A1U7XLS3_NICSY; transcription repressor MYB6-like
STRINGXP_009790561.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-68myb domain protein 111