PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790361.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 505aa    MW: 55390.8 Da    PI: 7.2429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.67.1e-25196252259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk  + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+++Hnh+
  XP_009790361.1 196 RDGYNWRKYGQKQVKIPQGSRSYYRCTHSECCAKK-IECSDHTNRVMEIIYRSQHNHD 252
                     7********************************98.*********************7 PP
2WRKY992.9e-31367424259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+ + +++++itY+g H+h+
  XP_009790361.1 367 SDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAVDSTSALIITYKGVHDHD 424
                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-21192254IPR003657WRKY domain
SuperFamilySSF1182903.66E-19193254IPR003657WRKY domain
SMARTSM007742.6E-23195253IPR003657WRKY domain
PROSITE profilePS5081118.177197254IPR003657WRKY domain
PfamPF031062.4E-17197252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-32351426IPR003657WRKY domain
SuperFamilySSF1182901.96E-27360426IPR003657WRKY domain
PROSITE profilePS5081132.363361426IPR003657WRKY domain
SMARTSM007743.4E-36366425IPR003657WRKY domain
PfamPF031062.4E-24368423IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDEENESSKA AGAEKSNLEE NKNDNSSVHD GGVLDDGGGE RKESGIESLR ELKVEISVSE  60
NLAPTAHSSV QQIESDVQSK FDTDSSSSHQ LSEVPVEYAL PPFEPAKEIK DKISVTRPET  120
LSAQVQTEHQ QRMPDEASSL ERSPTSVTPA ISSVSSPTLA ERHLSAVVNG STGEVAKRSS  180
DAKVLPIVPV LKTPSRDGYN WRKYGQKQVK IPQGSRSYYR CTHSECCAKK IECSDHTNRV  240
MEIIYRSQHN HDPPPRVNCS KESKPVVLPT PANDNRMIAC PNRSFNETVP SSLKENLQET  300
SPIAEKANQD SCGSDTDTEI TIKEEHSDEP EQKKRLKKSD ASSESVSRPG KKPKLVVHAA  360
CDVGISSDGY RWRKYGQKMV KGNPHPRNYY RCTSAGCPVR KHIERAVDST SALIITYKGV  420
HDHDMPVPKK RQSPPSAPLI AAAASASLTN LHAKKPELLQ HQKSTTQWSV DKEGALTGEK  480
LDLGGEKAME SARTLLSIGF EIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-27354426274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790361.10.0PREDICTED: probable WRKY transcription factor 32
RefseqXP_016505021.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-111WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S4CV830.0A0A1S4CV83_TOBAC; probable WRKY transcription factor 32
TrEMBLA0A1U7XL730.0A0A1U7XL73_NICSY; probable WRKY transcription factor 32
STRINGXP_009790361.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-105WRKY DNA-binding protein 32