PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790285.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 266aa    MW: 29671.2 Da    PI: 9.72
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30151209259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++pr+YY+C+s+ gC ++k+v+r+++dp++++itY++eHnh+
  XP_009790285.1 151 SDKWAWRKYGQKPIKGSPYPRGYYKCSSSkGCLARKQVDRNRSDPNMFNITYTSEHNHP 209
                     79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30141211IPR003657WRKY domain
PROSITE profilePS5081132.96145211IPR003657WRKY domain
SuperFamilySSF1182905.75E-26148211IPR003657WRKY domain
SMARTSM007742.9E-35150210IPR003657WRKY domain
PfamPF031062.4E-25152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEADWDLHAV VRGCATAAAT NTTTSSSSSS SSTITTISNS TNVHQVDNFI CFQDSFEPKF  60
DTTNVVQELH NLYEPFVIGE LQDLSIHQTL KQQQKLHNHQ LITGLIQPKH FTTSKSSASR  120
RISHAQMSPR IQKRKNKLKK VCQVPAEAMS SDKWAWRKYG QKPIKGSPYP RGYYKCSSSK  180
GCLARKQVDR NRSDPNMFNI TYTSEHNHPM PTHRSSLAGI ARQKPVNSKA SSAGDTNKPT  240
TSSPACLSPV PENQECSKED KEDSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-23135212280Disease resistance protein RRS1
5w3x_D1e-23135212280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790285.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1U7XUW90.0A0A1U7XUW9_NICSY; WRKY transcription factor 22-like
STRINGXP_009790285.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-57WRKY family protein