PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789804.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 408aa    MW: 45046.1 Da    PI: 5.3386
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.8e-06344439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    ++C+ ++e++ + +C+++  +lC +C  + H+       H++
  XP_009789804.1  3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                    68*****************************65677777765 PP
2CCT62.91e-21351394144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  XP_009789804.1 351 RSNAVLRYKEKKKTRKFDKHVRYASRKARADVRRRVKGRFVKAG 394
                     899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000219.30E-8447No hitNo description
PfamPF062034.2E-16351393IPR010402CCT domain
PROSITE profilePS5101715.041351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAVVRR  60
VEEKISLCKN CDSISHATGS MHKRQALSCY TGCPSAAELS TIWSFLLDGD STCQKGMGAM  120
SITDNQPRDN EDPQGKNNSQ DVSAAIEMSE LHTSSEKSTT LIESSLPTPD NKQNKLELYA  180
GSKNYSSSKG CYTGMKGSMI FEDDPFAQDF NMDEVDLSFE NYEELFSGSL DNPNQLFENE  240
DINGLFGTKD MSVSGSSCQD ADAIEVGASI RRVMTMQPAC SNAESADSLV SCKTEPSICF  300
ARQASILSFS NLGGESNAGD YQECGASTML LMGEPPWYHP FPETSLPSSS RSNAVLRYKE  360
KKKTRKFDKH VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLDETRSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789804.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like isoform X1
SwissprotQ9LUA91e-124COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1U7XSD60.0A0A1U7XSD6_NICSY; zinc finger protein CONSTANS-LIKE 10-like isoform X1
STRINGXP_009789804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-114B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]