PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789697.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 455aa    MW: 50985.5 Da    PI: 6.94
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.3e-36501931128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                     lp+G++F+Ptd+el+ e+L++kv +kk       +   +    +i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+++    
  XP_009789697.1  50 LPAGVKFDPTDQELI-EHLEAKVVSKKeskshplI---DefipTIEGEdGICYTHPEKLP-GVTKDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 139
                     799************.9999999888856665443...143334766646**********.555667799******************7333455 PP

             NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_009789697.1 140 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193
                     5544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575116No hitNo description
SuperFamilySSF1019414.05E-3946212IPR003441NAC domain
PROSITE profilePS5100533.5550212IPR003441NAC domain
PfamPF023655.2E-1651193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNKSSSSHQL GSISSCDLID AKLEEHQLCG SKQCPGCGQK LDGKPDWVGL PAGVKFDPTD  60
QELIEHLEAK VVSKKESKSH PLIDEFIPTI EGEDGICYTH PEKLPGVTKD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQNEEER EGELVVSKIF YQTQPRQCNT TTWSNNERSI NTGDHSGSGS  240
CSSSKEINNI NPNSHSHRDE LSAAVGVAMS SNYNTFNIQQ LKADHFSFLP FRKIFDEAGI  300
MDADASMASE AAAPAGTCEE PESQRQHPHH VTNEPSHQHH HHHQNQIATS AAFNISRPSP  360
PLSAIIAPPP PLHHTSVILD HDSFHVPRNY NFQQQQQQQH HKLGARSASG LEELIMGCTS  420
STDIKEESSL TNPQEADWLK YSSFWPDPEN TDHHE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789697.10.0PREDICTED: NAC domain-containing protein 4-like isoform X1
RefseqXP_009789698.10.0PREDICTED: NAC domain-containing protein 4-like isoform X1
SwissprotQ9M0F81e-176NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1U7XC900.0A0A1U7XC90_NICSY; NAC domain-containing protein 4-like isoform X1
STRINGXP_009789697.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-158NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]