PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009789695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 39121.8 Da PI: 6.9831 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.2 | 1.2e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+d++k++G +W +I+r+ g++R++k+c++rw++yl XP_009789695.1 16 KGPWTEDEDEKLIDYIKKYGHTNWQLIPRKAGLKRCGKSCRLRWNNYL 63 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e++++++ lG++ W++Ia++++ gRt++++k++++++l XP_009789695.1 69 RGGFSHEEEEIIINLHSVLGNK-WSRIAAHLP-GRTDNEIKNFYNTHL 114 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.032 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-18 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-14 | 18 | 63 | No hit | No description |
SMART | SM00717 | 2.3E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.007 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.82E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRYPCCKLD DNDLKKGPWT EDEDEKLIDY IKKYGHTNWQ LIPRKAGLKR CGKSCRLRWN 60 NYLRPDIKRG GFSHEEEEII INLHSVLGNK WSRIAAHLPG RTDNEIKNFY NTHLKKKLLK 120 LGIDPQTHKP ISDLNPLLKF SNQFSSNSNH FVSLASTLRL RAHFTLLAKI QQLINSNLFS 180 SIQGNILSNP NPLLFHESLK YESGQPQFLD SSLANFTTTI PCLDNTNSLS NDYSYISNSS 240 EVPSGTSDKI EMIQRRLAQS FLCNDDMQKS RNGSNNFELC QANELNSNEN QVEGVPARAS 300 TQGNCNFNQN FIPTFSELDD IAAWEIPQDN EEINTFWNTI FQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 13 | 118 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789695.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9SBF3 | 2e-68 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A1U7XT94 | 0.0 | A0A1U7XT94_NICSY; transcription factor MYB34-like | ||||
STRING | XP_009789695.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-70 | myb domain protein 9 |
Publications ? help Back to Top | |||
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