PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009789570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 544aa MW: 60639 Da PI: 7.6761 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_009789570.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 ****************66666***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.4E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.8E-11 | 4 | 46 | No hit | No description |
CDD | cd00202 | 9.48E-17 | 6 | 55 | No hit | No description |
Pfam | PF00320 | 1.0E-13 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.8E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.6E-9 | 281 | 365 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH 60 RVSRFKNMPM KNKEAKVLKR KQSHDMVEVG SPPDYNFGFR KCLDEDTSNR SSSGSVVSNS 120 ESCAQFGSAE ASDLTGPAQS NIWDTTVPSK KRTCFNRPKP SSVEKLTKDL YTILHEQQQS 180 SCFSASSEDD LLFESEKPMV SVEIGHGSML IRHPSSIGRE EESEASSLSV DNKHRSVNEA 240 YSRLTTRPVN IIKGVNSPNM GADRTKKPIG QAVEQDQIKR NKEKLETLQI LGHHNSPLRY 300 IELKDVLNYE EFMRHLSSDE QQQLLKYLPP VDSFAPPDSL RSMFESSQFE ENVSSFQKLL 360 AEGVFDNSLP GVKLEDCRTL KRFILCYLSK SKWVEQYNLL KDTKCKNSSS GSEVAGEQSV 420 VGTCHSVNAK RPREGPHLKY SGAKTTMKSP KSAVMKSIYE QKELLDNDGS YSSPKSSFAL 480 PSETSSLVLD SFRSANENSD QDLLLNVPSN SYFPQAELLL PTSSFTPQAS ASSSSMYPSH 540 LVRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-111 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789570.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Refseq | XP_016470951.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-143 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A1S4A306 | 0.0 | A0A1S4A306_TOBAC; GATA transcription factor 26-like | ||||
TrEMBL | A0A1U7XSU6 | 0.0 | A0A1U7XSU6_NICSY; GATA transcription factor 26-like | ||||
STRING | XP_009789570.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2089 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-145 | GATA transcription factor 26 |