PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009789499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 48263.6 Da PI: 7.9558 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.9e-09 | 130 | 150 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg XP_009789499.1 130 VCSEFRK-GNCSRGDNCEFAHG 150 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.75E-5 | 124 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 129 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 130 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 160 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.287 | 160 | 184 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MEGLCAEQHH HKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSADPVSD MFMDSPKSDS 60 DTLFQKFLPY NSLDEDDSDP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD 120 PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPTR YRTEACKDGK NCKRKVCFFA 180 HTPRQLRVLP PSCHESSGPG SSPRNSPVEK KYRNLNHCCM FCHSVSASPT STLMGMSHMS 240 PPMSPSLSPP LSPAKTQFSS PMSRYSDRFG SVESSCGMGQ LDHAGLMSYK DALTELVSSL 300 EAMNVNANHE ANSSSSSAAA AAVNNFDGKL PWLDVSFNNN NINNYDDQHQ FLLSPYSTPS 360 PSPVSSSRTK FYTRDFPSPS PVSSSGLSFS PVSSSNMSFV EDTKNNATNR YYNENGLGGP 420 DFGWVNDLLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789499.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
Refseq | XP_016489908.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
TrEMBL | A0A1S4BLZ5 | 0.0 | A0A1S4BLZ5_TOBAC; zinc finger CCCH domain-containing protein 61-like | ||||
TrEMBL | A0A1U7XRH6 | 0.0 | A0A1U7XRH6_NICSY; zinc finger CCCH domain-containing protein 61-like | ||||
STRING | XP_009789499.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10595 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 2e-79 | C3H family protein |