PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789456.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 405aa    MW: 44419.8 Da    PI: 5.0691
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.89.1e-3590192197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                     klfqrlw++eDei lLqG++d++ ++g       + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +f
  XP_009789456.1  90 KLFQRLWTDEDEIELLQGFLDYTIQRGLnnsstpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATF 184
                     579************************97766444455********************************************************* PP

          DUF573  90 elskkiWg 97 
                     e+s+kiW 
  XP_009789456.1 185 EISRKIWT 192
                     *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3292191IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MASLDHHQHQ PVYNDDNLDD DVDVDGDDDS TSSPSLAGEV TIAVSGVGVS PIDSLALYPD  60
LKRRRLDDFT IPVILPEKKP SATFDDSQRK LFQRLWTDED EIELLQGFLD YTIQRGLNNS  120
STPQHHYDTT AFYDQIKSKF QLDFNKNQLV EKLRRLKKKY RTVMSKMGSG KEFVFKSAHD  180
HATFEISRKI WTNLGSAVRG GSNGVAGAVV LYAPPEDGGL DDDDAHVNPN PYANDLIDHS  240
PKFNLNSNPN GIDIKTPRPR KRSPAASTEA VKVEQQPYQP SGGSTTVPLA AAPVAEVAAT  300
ATATVAASIP SLIEETVRNC VSPIFKELLN SVANLNGPSR GFGFGGMGIS PIPLGFGGGA  360
MSMEMTGDEK WRKQQMLELE VYSKRLELVQ DQIKAQLEEL RSMGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789456.10.0PREDICTED: uncharacterized protein LOC104237077
TrEMBLA0A1U7XII80.0A0A1U7XII8_NICSY; uncharacterized protein LOC104237077
STRINGXP_009789456.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.18e-72DNA-binding storekeeper protein-related transcriptional regulator