PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009789246.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 181aa MW: 20785 Da PI: 5.7473

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009789246.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+ XP_009789246.1 118 LDDGYKWRKYGKKMVKDSPNPRNYYRCSVEGCPVKKRVERDKEDCRYVITTYEGVHNHQ 176 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-32	104	178	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-28	111	178	IPR003657	WRKY domain
PROSITE profile	PS50811	31.307	113	178	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	118	177	IPR003657	WRKY domain
Pfam	PF03106	2.8E-23	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MYTMRIQSIT MAANNPCTNM SYGSFRSLDS PDSDFSNQLI NFELSDIFEL DNWPVHDDPT 60 SVVSDPSQYS NYAANEVVTT ERSRSYQDGP TNNVGSSSEK KEVKDKVAFK TLSQIEILDD 120 GYKWRKYGKK MVKDSPNPRN YYRCSVEGCP VKKRVERDKE DCRYVITTYE GVHNHQGPSQ 180 F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	108	179	7	78	Probable WRKY transcription factor 4
2ayd_A	9e-25	106	178	2	74	WRKY transcription factor 1
2lex_A	1e-24	108	179	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ871280	0.0	AJ871280.1 Nicotiana tabacum mRNA for putative WRKY transcription factor 10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009789246.1	1e-135	PREDICTED: probable WRKY transcription factor 50
Refseq	XP_016458903.1	1e-135	PREDICTED: probable WRKY transcription factor 50
Swissprot	Q8VWQ5	2e-37	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A1S3Z3G0	1e-133	A0A1S3Z3G0_TOBAC; probable WRKY transcription factor 50
TrEMBL	A0A1U7XHV9	1e-133	A0A1U7XHV9_NICSY; probable WRKY transcription factor 50
STRING	XP_009789246.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-38	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]