PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789114.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 335aa    MW: 37773.3 Da    PI: 7.0111
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32179236259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vk+s fpr+YYrCtsa+C+vkk+ver+ +dp++v++tYeg+H+h+
  XP_009789114.1 179 EDGYRWRKYGQKTVKNSSFPRNYYRCTSASCNVKKRVERCFNDPSIVVTTYEGKHTHP 236
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-35163238IPR003657WRKY domain
SuperFamilySSF1182902.88E-29170238IPR003657WRKY domain
PROSITE profilePS5081130.871173238IPR003657WRKY domain
SMARTSM007743.4E-38178237IPR003657WRKY domain
PfamPF031061.2E-25179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MESYRDIAIK MEDPMSYFDN FPVISNSFTG LVSDYNFAVE GKNNSINSSL GFMELLGVQD  60
FSSASVFDAT NLDKLLPKEE KYHIEPAVST AADESQNKLT VAADHESSNI FNTPSTPNSS  120
SISSETNEGH AQDAEGEVAE KEQTKTKQHR LKAKKTVSQK KKREPRIAFM TKSEVDFLED  180
GYRWRKYGQK TVKNSSFPRN YYRCTSASCN VKKRVERCFN DPSIVVTTYE GKHTHPSPMN  240
MNMINMPRPT LFPTRVFPSP APTATFPLQM PFPINQFAQP HFNDLTTSLA SNLDHAALVA  300
HGRRFCSTPS AAEIMRDQGF LQDLMSSRVV EEDYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261712381077Probable WRKY transcription factor 4
2lex_A4e-261712381077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569169e-90EU056916.1 Solanum tuberosum WRKY transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789114.10.0PREDICTED: probable WRKY transcription factor 68 isoform X1
SwissprotO229001e-44WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U7XQB20.0A0A1U7XQB2_NICSY; probable WRKY transcription factor 68 isoform X1
STRINGXP_009789114.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-43WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]