PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788985.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 432aa    MW: 49757.1 Da    PI: 6.238
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.64.4e-31271325155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rW+++LHerF+e+v++LGG++kAtPk+il+lm+ +gLtl+hvkSHLQkYR 
  XP_009788985.1 271 KTRIRWSEDLHERFLECVNRLGGADKATPKQILNLMDSEGLTLDHVKSHLQKYRN 325
                     68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.411268328IPR017930Myb domain
SuperFamilySSF466895.55E-16269325IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-28269326IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-25271326IPR006447Myb domain, plants
PfamPF002491.3E-7275324IPR001005SANT/Myb domain
PfamPF143791.5E-19356403IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSIQRFFTQD RAPHTNEFSS DYTLDFPKIL AEDLVAQQQY SSHMGFCFQS EKRRQQQHQQ  60
TCNLPIATAS SNTIISFFGS PTSAFFATER CLRLTQHDNQ DNTSQLMLNN NDLNQDHTSQ  120
LMIDNYDLNQ DNTSQLINNY DLQRSSYGPQ QSRNGFLADS IAQPEPDFQH NISLPSFIRP  180
EFSTSQPLRR QYSFSDVSEN ERVLHLKNEL LGEFDTSYRR HPSIPFDGNQ NYSISHDFCG  240
CPLEKMRQQC VSPSLTSRKS ASSGVSNKHS KTRIRWSEDL HERFLECVNR LGGADKATPK  300
QILNLMDSEG LTLDHVKSHL QKYRNAKHIP ESTETGKSEK RNSPDDVTEI EGKTGIEIKE  360
ALKMQLEVQR CLHEQLETQR TLQMRIEEQA KKLKRIFDQQ QRTNKNLLER QNSSISSPAQ  420
DNAEILDVED SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788985.10.0PREDICTED: uncharacterized protein LOC104236700 isoform X1
RefseqXP_016433946.10.0PREDICTED: uncharacterized protein LOC107760416 isoform X1
TrEMBLA0A1S3X2990.0A0A1S3X299_TOBAC; uncharacterized protein LOC107760416 isoform X1
TrEMBLA0A1U7XR950.0A0A1U7XR95_NICSY; uncharacterized protein LOC104236700 isoform X1
STRINGXP_009788985.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-51G2-like family protein