PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009788885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 165aa MW: 19242.8 Da PI: 9.1536 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.3 | 1.7e-41 | 53 | 128 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqve+C dls ak+y++rhk+C+vh+kap v+v+gl+qrfCqqCsrfhe+sefD +krsCrrrLa+hnerrrk+ XP_009788885.1 53 CCQVEKCGLDLSGAKKYYKRHKLCQVHAKAPIVFVAGLRQRFCQQCSRFHEVSEFDGTKRSCRRRLAGHNERRRKT 128 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-32 | 46 | 115 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.043 | 51 | 128 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.41E-38 | 52 | 130 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.3E-33 | 54 | 127 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MATHIHGMLL KNIAENNDFD EEEETEEEEE ESNLKRKRLN VEKKKGSNSE GPCCQVEKCG 60 LDLSGAKKYY KRHKLCQVHA KAPIVFVAGL RQRFCQQCSR FHEVSEFDGT KRSCRRRLAG 120 HNERRRKTPL AIKLEDNQCR QINGEDRPQL TLTNRKASFK NYHIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 54 | 127 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788885.1 | 1e-120 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016481940.1 | 1e-120 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38740 | 2e-40 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A1S4AZ43 | 1e-118 | A0A1S4AZ43_TOBAC; squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A1U7XQY5 | 1e-118 | A0A1U7XQY5_NICSY; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_009788885.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-38 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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