PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788853.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 398aa MW: 43693.2 Da PI: 7.4798

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	222	277	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_009788853.1 222 KQRRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 277 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.865	219	279	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-18	220	280	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-29	220	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-28	222	277	IPR006447	Myb domain, plants
Pfam	PF00249	8.0E-8	224	275	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MMINNHENNY TEKMQRCQQY IDALEQERNK IQVFSRELPL CLELVTQAIE TYKQQLSGTT 60 TEYNVHTQSD VECSEEHTSS DVPILEEFIP LKGTFSHEDE DEDERDSHKS KTYNISDTSC 120 SKDNKNSDKS CKKSDWLRSV QLWNNNQTPD PTPKEEVTPK KGAVVEVKKN GSGGAFHPFK 180 KEKSAAATTE PPTSAAVAAA AASSTAETGS GSKKEEKDEK RKQRRCWSPE LHRRFLQALQ 240 QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPSSIHNNH QQPPQFVVVG 300 GIWVPPPEYS AMAAAAPSAS GEASGVANSN GIYAPIATLP KGPLHDVSGG TLKQRQHNNK 360 PSRSSERGSG SHSDGGGVHS NSPATSSSTH TTTASPPY

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MMINNHENNY TEKMQRCQQY IDALEQERNK IQVFSRELPL CLELVTQAIE TYKQQLSGTT  60
TEYNVHTQSD VECSEEHTSS DVPILEEFIP LKGTFSHEDE DEDERDSHKS KTYNISDTSC  120
SKDNKNSDKS CKKSDWLRSV QLWNNNQTPD PTPKEEVTPK KGAVVEVKKN GSGGAFHPFK  180
KEKSAAATTE PPTSAAVAAA AASSTAETGS GSKKEEKDEK RKQRRCWSPE LHRRFLQALQ  240
QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPSSIHNNH QQPPQFVVVG  300
GIWVPPPEYS AMAAAAPSAS GEASGVANSN GIYAPIATLP KGPLHDVSGG TLKQRQHNNK  360
PSRSSERGSG SHSDGGGVHS NSPATSSSTH TTTASPPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-13	222	275	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	9e-47	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788853.1	0.0	PREDICTED: transcription factor LUX-like
Swissprot	Q9FPE8	1e-101	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A1U7XDA3	0.0	A0A1U7XDA3_NICSY; transcription factor LUX-like
STRING	XP_009788853.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-78	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]