PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788710.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 150aa    MW: 16543.2 Da    PI: 10.443
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-192154134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ C+ttkTplWR gp g+k+LCnaCG++yrkk+
  XP_009788710.1 21 CTDCKTTKTPLWRVGPYGPKSLCNACGIKYRKKK 54
                    ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.9671551IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-161572IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-131754No hitNo description
Gene3DG3DSA:3.30.50.101.3E-151954IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.07E-132054No hitNo description
PfamPF003203.2E-172154IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDPTQKEDSL ADETTESAKS CTDCKTTKTP LWRVGPYGPK SLCNACGIKY RKKKGTPSGF  60
GKDPDKKKKE TDSSNSSTDK LAHSQKEKIG NDGKLSKGLK VRFMMLGKEV VILQRQRSSM  120
KKKPTIHRKF GEVERAALLL MALSCGSVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15168KKKGTPSGFGKDPDKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788710.11e-107PREDICTED: GATA transcription factor 17-like
RefseqXP_016454370.11e-107PREDICTED: GATA transcription factor 17-like
TrEMBLA0A1S3YQX21e-105A0A1S3YQX2_TOBAC; GATA transcription factor 17-like
TrEMBLA0A1U7XQE41e-105A0A1U7XQE4_NICSY; GATA transcription factor 17-like
STRINGXP_009788710.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.17e-28GATA transcription factor 17