PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788675.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 489aa    MW: 54265.3 Da    PI: 7.4586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788675.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09305352455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009788675.1 305 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 352
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.06E-10299356No hitNo description
SuperFamilySSF474592.49E-17299371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17301369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6305352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEKGNLFTND GNTTMGNYGI GIQENEQIQN CFFNPNWENS DPFESALSSM VSSPNANIPN  60
GSTNNSSGEN FVLRELIGRL GSICNSREMS PNSNMINSST NNSCYSTPLN SPPKLNLSMR  120
GNLSHNQLPQ FSADPGFAER AARFSCFANK TFKSFNEAEL LQHNRLIVAQ PNLESGKLSR  180
VSSNQSIKVS SGSQIQEFKD VNLVPKNSEL GDSRENSSVS EQIPVGENDT NSRKRKSISK  240
GKSKNANVSL EKNESNAKRS KSEENNGNDK AKEEEKAAKK EEKAVPEPPK DYIHVRARRG  300
QATDAHSLAE RVRREKISER MKLLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM  360
KLATVNPRMD FTMEALLSKD MFQSRGSLSQ NMYSSETSAQ AFPYGFQSQP GQSFHKGTEF  420
PFPINSLNNN LARNSNMQLP SLDGYVESTP QVPTFFEDDL NSVVQMGFGQ NQNQSYPGNV  480
PTSQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788675.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1U7XQA20.0A0A1U7XQA2_NICSY; transcription factor bHLH62-like
STRINGXP_009788675.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-91bHLH family protein