PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009788650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 395aa MW: 42827.7 Da PI: 9.8513 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 61.5 | 1.7e-19 | 252 | 314 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+kre+rkq+NRe+ArrsR+RK+ae e L+ +vk+L++eN Lk+e+++ +++++lk e+ XP_009788650.1 252 EREIKREKRKQSNRESARRSRLRKQAEAEDLAIRVKSLTSENLGLKSEINKFIENSENLKLEN 314 89**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.1E-33 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 4.8E-13 | 124 | 233 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.4E-14 | 247 | 311 | No hit | No description |
Pfam | PF00170 | 6.2E-19 | 252 | 314 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.4E-16 | 252 | 316 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.76 | 254 | 317 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-10 | 255 | 311 | No hit | No description |
CDD | cd14702 | 1.08E-16 | 257 | 301 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 259 | 274 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGNSKEGKSC KPEKSSSTAP DQSSIHVYPD WAAMQAYYGP RVAVPPYVNS PVAPGHAPHP 60 YMWGPLQPMM PPYGAPYAGI YTHGGVYAHP GVPIVSRPQA HGMTSSPAVS QTMDAATLRN 120 RSVDNGDGTD YGASQSGQTE GSSDGSNIHT AEVGENSKKR SRETTPNDSG DGKTRTRSSP 180 QPREVNGASK KETSIAVSHG NIAEKVVGTV FSPTMTPTLE LRNPVGTLVK ASPTNVSRIS 240 PAVPGEVWLQ NEREIKREKR KQSNRESARR SRLRKQAEAE DLAIRVKSLT SENLGLKSEI 300 NKFIENSENL KLENAALMER LKNKQRGNAE EVTFGKIDDK RLQPISTADL LARVNNSGLL 360 DRTNEDSEIR ENNASGAKLH QLLDASRRTD AVAAR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 274 | RRSRLRK |
2 | 268 | 275 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z48603 | 0.0 | Z48603.1 N.tabacum mRNA for TAF-3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788650.1 | 0.0 | PREDICTED: transcriptional activator TAF-1-like isoform X2 | ||||
Refseq | XP_016483466.1 | 0.0 | PREDICTED: transcriptional activator TAF-1-like isoform X2 | ||||
Swissprot | Q99089 | 1e-125 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A1S4B3P9 | 0.0 | A0A1S4B3P9_TOBAC; transcriptional activator TAF-1-like isoform X2 | ||||
TrEMBL | A0A1U7XQ76 | 0.0 | A0A1U7XQ76_NICSY; transcriptional activator TAF-1-like isoform X2 | ||||
STRING | XP_009788641.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 2e-87 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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