PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788641.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 424aa    MW: 45741.8 Da    PI: 9.8241
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.73.4e-20281343163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+e+kre+rkq+NRe+ArrsR+RK+ae e L+ +vk+L++eN  Lk+e+++  +++++lk e+
  XP_009788641.1 281 EREIKREKRKQSNRESARRSRLRKQAEAEDLAIRVKSLTSENLGLKSEINKFIENSENLKLEN 343
                     89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.5E-33193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.3E-16134262No hitNo description
Gene3DG3DSA:1.20.5.1709.4E-14276340No hitNo description
PfamPF001706.9E-19281343IPR004827Basic-leucine zipper domain
SMARTSM003382.4E-16281345IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.76283346IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-10284340No hitNo description
CDDcd147021.04E-16286330No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGNSKEGKSC KPEKSSSTAP DQSSIHVYPD WAAMQAYYGP RVAVPPYVNS PVAPGHAPHP  60
YMWGPLQPMM PPYGAPYAGI YTHGGVYAHP GVPIVSRPQA HGMTSSPAVS QTMDAATLSM  120
DTSAKSSENT DQRTSKLKGS NGLGMSIGNR SVDNGDGTDY GASQSGQTEG SSDGSNIHTA  180
EVGENSKKRS RETTPNDSGD GKTRTRSSPQ PREVNGASKK ETSIAVSHGN IAEKVVGTVF  240
SPTMTPTLEL RNPVGTLVKA SPTNVSRISP AVPGEVWLQN EREIKREKRK QSNRESARRS  300
RLRKQAEAED LAIRVKSLTS ENLGLKSEIN KFIENSENLK LENAALMERL KNKQRGNAEE  360
VTFGKIDDKR LQPISTADLL ARVNNSGLLD RTNEDSEIRE NNASGAKLHQ LLDASRRTDA  420
VAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303RRSRLRK
2297304RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ486030.0Z48603.1 N.tabacum mRNA for TAF-3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788641.10.0PREDICTED: transcriptional activator TAF-1-like isoform X1
RefseqXP_016483464.10.0PREDICTED: transcriptional activator TAF-1-like isoform X1
RefseqXP_016483465.10.0PREDICTED: transcriptional activator TAF-1-like isoform X1
SwissprotQ990891e-134CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1S4B3P10.0A0A1S4B3P1_TOBAC; transcriptional activator TAF-1-like isoform X1
TrEMBLA0A1U7XG560.0A0A1U7XG56_NICSY; transcriptional activator TAF-1-like isoform X1
STRINGXP_009788641.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-98G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]