PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788612.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 385aa    MW: 42837.4 Da    PI: 4.3993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-19120169255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  XP_009788612.1 120 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDIEARRIRG 169
                     69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.065120177IPR001471AP2/ERF domain
SMARTSM003802.2E-36120183IPR001471AP2/ERF domain
CDDcd000183.37E-33120178No hitNo description
SuperFamilySSF541714.77E-22120179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-32120179IPR001471AP2/ERF domain
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PfamPF008473.6E-11121167IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISDC IPPLRSSRRL TADLLWGCSD LNQKKNPFNY QYSKPLRSEV VDLDYDFEAD  60
FQDFKDCSDD DEDSYKVDGL KPFAFSAPEQ SGASVGSKSL KSVDLDKEVE KSSKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPQ KGVRVWLGTF NTAEEAARAY DIEARRIRGK KAKVNFPDEA  180
PVPVSRQAGK INPRKELSNP VLCDTTFVNN LDFGCYDNLG FFEEKPTKHL GYQDLCPTPG  240
DMGPNSYVPP AAAGAYFNSD QGSNSFEPSD FGWGETCSRT PEISSVLSAA VESDEAQFVE  300
GACPEEKLKS CSNISAPNDG NTAPKLSEEL STFESQMNFF QTQQSEGNLD ASVDAFLNAD  360
ATQDVENEMD LWFFDELSSL MRGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21120177260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788612.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016438849.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1S3XGA80.0A0A1S3XGA8_TOBAC; ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1U7X9260.0A0A1U7X926_NICSY; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_009788612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-56related to AP2 12