PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009788493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 360aa MW: 39211.4 Da PI: 7.1692 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218 | 2e-67 | 125 | 284 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklss 93 ++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ +++++k kr+ + ++s+l +t+l+s XP_009788493.1 125 AGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQKERHdqlhlDHNNNKPKRQREDPSASSLVCTRLPS 219 5689***************************************************99988877778887444444455555688899999*9999 PP DUF702 94 aeskkel....etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s + + e+ ++P++vss+avf+c+++ss++d+e++laYq+av+igGhvfkGiL dqG+e+ XP_009788493.1 220 NTSASLMfiglEVGKFPAKVSSAAVFQCIQMSSIEDAEDQLAYQAAVNIGGHVFKGILCDQGPES 284 988765422226667************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-64 | 126 | 283 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.0E-27 | 128 | 170 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.2E-24 | 234 | 282 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MANFFSLDGR GSSSQDQQQE ISSSHHRINN RPVPTEISSE SWFLYRNDHN QEMPTYKGFE 60 LWQNTTPQHQ PEQQQQFRHP VYPLQDLYST AVGLGVGPSQ SGFDIFGGDQ EASRSGFVMM 120 RSGGAGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLSAL 180 QQQQKERHDQ LHLDHNNNKP KRQREDPSAS SLVCTRLPSN TSASLMFIGL EVGKFPAKVS 240 SAAVFQCIQM SSIEDAEDQL AYQAAVNIGG HVFKGILCDQ GPESEYNNNM AAAGDTSSGG 300 GSGSAGVQHH HNSAATAIIA SGGAAAAAEA SNFLDPSLFP APLSTFMSAG TQFFPPPRSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 203 | KPKRQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788493.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1 | ||||
Swissprot | K4B6C9 | 1e-160 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A1U7XCA0 | 0.0 | A0A1U7XCA0_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X1 | ||||
STRING | XP_009788493.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-70 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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