PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788493.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 360aa    MW: 39211.4 Da    PI: 7.1692
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022182e-671252844154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklss 93 
                      ++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++     +++++k kr+ +  ++s+l +t+l+s
  XP_009788493.1 125 AGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQKERHdqlhlDHNNNKPKRQREDPSASSLVCTRLPS 219
                     5689***************************************************99988877778887444444455555688899999*9999 PP

          DUF702  94 aeskkel....etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++s + +    e+ ++P++vss+avf+c+++ss++d+e++laYq+av+igGhvfkGiL dqG+e+
  XP_009788493.1 220 NTSASLMfiglEVGKFPAKVSSAAVFQCIQMSSIEDAEDQLAYQAAVNIGGHVFKGILCDQGPES 284
                     988765422226667************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-64126283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-27128170IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.2E-24234282IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MANFFSLDGR GSSSQDQQQE ISSSHHRINN RPVPTEISSE SWFLYRNDHN QEMPTYKGFE  60
LWQNTTPQHQ PEQQQQFRHP VYPLQDLYST AVGLGVGPSQ SGFDIFGGDQ EASRSGFVMM  120
RSGGAGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLSAL  180
QQQQKERHDQ LHLDHNNNKP KRQREDPSAS SLVCTRLPSN TSASLMFIGL EVGKFPAKVS  240
SAAVFQCIQM SSIEDAEDQL AYQAAVNIGG HVFKGILCDQ GPESEYNNNM AAAGDTSSGG  300
GSGSAGVQHH HNSAATAIIA SGGAAAAAEA SNFLDPSLFP APLSTFMSAG TQFFPPPRSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203KPKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788493.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
SwissprotK4B6C91e-160EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A1U7XCA00.0A0A1U7XCA0_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGXP_009788493.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-70Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]