PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788435.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27901.4 Da    PI: 9.0936
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.91e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_009788435.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box96.15.5e-32821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++++++++qe++kLk+++e Lq++qRh+lGedL++L++keL+qLe+qL++sl++iRs++++ +l+q+++lq+ke++l e+n++L+ kl+e
  XP_009788435.1  82 QSSTDSQNSYQEYTKLKARVEVLQQSQRHILGEDLGQLNIKELEQLERQLDSSLRQIRSRRTQNILDQLSDLQQKEQSLLEINRSLKIKLDE 173
                     788999*********************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-34283IPR002100Transcription factor, MADS-box
CDDcd002654.94E-43276No hitNo description
PRINTSPR004048.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2784171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.68187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSISKTLERY HRCSYSNLEA GQSSTDSQNS YQEYTKLKAR VEVLQQSQRH ILGEDLGQLN  120
IKELEQLERQ LDSSLRQIRS RRTQNILDQL SDLQQKEQSL LEINRSLKIK LDENYVAYQT  180
HWDTGEQNIQ FRHRPAQPQE FFQPLQCNST MPNRYNQAPW DNIESSTQNA TGVLPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-268917119101Developmental protein SEPALLATA 3
4ox0_B4e-268917119101Developmental protein SEPALLATA 3
4ox0_C4e-268917119101Developmental protein SEPALLATA 3
4ox0_D4e-268917119101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352413e-58AF335241.1 Petunia x hybrida MADS-box transcription factor FBP23 (FBP23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788435.11e-177PREDICTED: MADS-box protein CMB1-like
SwissprotK4BND81e-144MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A1U7XPL41e-176A0A1U7XPL4_NICSY; MADS-box protein CMB1-like
STRINGXP_009788435.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]