PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788345.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 510aa MW: 56694.5 Da PI: 4.5327

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.1	1.9e-104	140	502	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+ Ll+c eav+ ++l+la+al+ ++e+a ++ +m+++a+yf+eAL +r+++ +l ++++ s + ++++ f+e+ P+l+f++ XP_009788345.1 140 LVKILLACGEAVQRNNLALADALVRLIREHAVSEFGAMKKVATYFAEALDQRIQG--MNLEDIMEFSCYT-----DNIMQ-MRFHEIRPYLEFAY 226 6789*************************************************..4455545444443.....33333.35******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 N+aIl+a+++++rvHiiDf+++qG QW+aL+q +a Rp+gpp +R+Tg+gsp+ ++++l++++++La+fA+++gv+fef+ +v+++l+d++ XP_009788345.1 227 SSVNRAILDAFANSSRVHIIDFSLNQGPQWLALMQDFALRPGGPPAFRLTGIGSPD--NTDALRQLKWKLAEFANKFGVEFEFRGIVVDSLADVD 319 **************************************************76..9******************************** PP GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...e 280 +++L+++p E +aVn++++ h+ll ++++e+ vL+ +k++ Pk+v+++e+ea+ + F++rf +a +yys++f sle++ ++++ + XP_009788345.1 320 TSRLDIRPsnYEEVAVNSIFEFHHLLYTPGEIEK----VLNSIKEMHPKIVTIIEEEANQ--SVFMDRFNHAWSYYSKMFGSLENSESTHDqhnS 408 ****999***********99999999....***************975..9****************776433333344 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + +e+lg++i n+vace + ++tl++Wr ++++aGF+pv+l+ +++ qa ++l+ +k +gyrve+++g+l+l W++rpL+s+S+W+ XP_009788345.1 409 GDSRLVHEYLGQQINNMVACELGT-ELVETTLSEWRVKMNSAGFNPVQLGPSMYVQATMILALFKnRNGYRVEQNDGCLTLSWHGRPLISTSVWQ 502 555666667********887.5667789*****************************9**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.863	114	481	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-102	140	502	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MSSGNSSSDK LLEDGESFDS TTDAIIYGTS DISDLTLSLI SDPNIPNSSD SSTSIDDHIS 60 TAAGGCDDMI VSSGATSRIF NSSTDFRAFS RNISVVCNNY SDKVAEEGSA ESSNRMRSRD 120 GLELCLGLRI GSEAVNEEPL VKILLACGEA VQRNNLALAD ALVRLIREHA VSEFGAMKKV 180 ATYFAEALDQ RIQGMNLEDI MEFSCYTDNI MQMRFHEIRP YLEFAYSSVN RAILDAFANS 240 SRVHIIDFSL NQGPQWLALM QDFALRPGGP PAFRLTGIGS PDNTDALRQL KWKLAEFANK 300 FGVEFEFRGI VVDSLADVDT SRLDIRPSNY EEVAVNSIFE FHHLLYTPGE IEKVLNSIKE 360 MHPKIVTIIE EEANQSVFMD RFNHAWSYYS KMFGSLENSE STHDQHNSGD SRLVHEYLGQ 420 QINNMVACEL GTELVETTLS EWRVKMNSAG FNPVQLGPSM YVQATMILAL FKNRNGYRVE 480 QNDGCLTLSW HGRPLISTSV WQLTPPPSLG

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MSSGNSSSDK LLEDGESFDS TTDAIIYGTS DISDLTLSLI SDPNIPNSSD SSTSIDDHIS  60
TAAGGCDDMI VSSGATSRIF NSSTDFRAFS RNISVVCNNY SDKVAEEGSA ESSNRMRSRD  120
GLELCLGLRI GSEAVNEEPL VKILLACGEA VQRNNLALAD ALVRLIREHA VSEFGAMKKV  180
ATYFAEALDQ RIQGMNLEDI MEFSCYTDNI MQMRFHEIRP YLEFAYSSVN RAILDAFANS  240
SRVHIIDFSL NQGPQWLALM QDFALRPGGP PAFRLTGIGS PDNTDALRQL KWKLAEFANK  300
FGVEFEFRGI VVDSLADVDT SRLDIRPSNY EEVAVNSIFE FHHLLYTPGE IEKVLNSIKE  360
MHPKIVTIIE EEANQSVFMD RFNHAWSYYS KMFGSLENSE STHDQHNSGD SRLVHEYLGQ  420
QINNMVACEL GTELVETTLS EWRVKMNSAG FNPVQLGPSM YVQATMILAL FKNRNGYRVE  480
QNDGCLTLSW HGRPLISTSV WQLTPPPSLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-49	147	501	26	378	Protein SCARECROW
5b3h_A	7e-49	147	501	25	377	Protein SCARECROW
5b3h_D	7e-49	147	501	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU048871	1e-171	EU048871.1 Nicotiana tabacum isolate SSAP gp91tr retrotransposon Tnt1, flanking sequence and LTR.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788345.1	0.0	PREDICTED: DELLA protein GAI-like
Swissprot	Q7Y1B6	1e-145	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A1U7XPD6	0.0	A0A1U7XPD6_NICSY; DELLA protein GAI-like
STRING	XP_009788345.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16964	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-126	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]