PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788149.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 459aa    MW: 51879.6 Da    PI: 4.953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14258304354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h + Er+RR ++N+++  Lr+++P++      K++ a+i++ A+eYI++L
  XP_009788149.1 258 TKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIEYINEL 304
                     78*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-12258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15258323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-12258309No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14258316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MYVESDCFDP AASVQHEDVF AIEENTYQQD AAVVAAAALE MQLQQQLNLE MEQCYNNTHN  60
NNNNMQELVH EHNNQGLSCD QSNWGEMSFP PYQNQEDNNN FQHAAHDIQN GHDQQPYLPT  120
PDLLNMFPLP RSSISFTNTN TNQASNLLTS LGLLGDINIP ATADGASNPS AIYDPSLLPL  180
NLPPQPPLLR ELFHSLPHGY GLRNLRSTSS FFNGLEERDQ LSGALYQDGE ERPFDNGIFE  240
FSADMNGIAK NRDIGKDTKH FATERQRRVH LNDKYKALRS MVPNPSKNDR ASIVKDAIEY  300
INELKREVHD LELMVEKKRC NRDRIKRQKT EEGGNSMDGS NAKQMDEVDQ SYNGNSLRSS  360
WLQRRSKNTE VDVRVVDHEV TIKLVQQKRI NCLLFASKVL DDLQLDLHHV AGGLIGDYYS  420
FLFNSKICEG STVYASAIAK KLIEVVDIQY AAIAPTNSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-126HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788149.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_016475217.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A1S4AEW60.0A0A1S4AEW6_TOBAC; transcription factor bHLH91-like
TrEMBLA0A1U7XMH40.0A0A1U7XMH4_NICSY; transcription factor bHLH91-like
STRINGXP_009788149.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-74bHLH family protein