PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009788119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 583aa MW: 65246.8 Da PI: 7.0402 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 422.6 | 3.3e-129 | 214 | 582 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + lL++cA+a+++++l +l+a+ ++ s +gdp+qRl ay++e+L ar s++++y+al+++e + + l+++++++e++P+lkf+++ XP_009788119.1 214 KPLLIACARALTENKLDDFGSLIAKARNAISITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMHILYEICPYLKFGYM 305 568*****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + l +g+rL+++ e++++p+ef++ v ++ XP_009788119.1 306 AANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLAFVGKRLTDISEKFNIPVEFHA-VPVFAPEV 399 ******************************************************999999**************************.6888999* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 + ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F+ rfleal+yy a+f+s++++l r+ +eri+ XP_009788119.1 400 TRDMLDVRPGEALAVNFPLVLHHTPDESVDVTNPRDELLRMVKSLSPKVVTLVEQESNTNTAPFFPRFLEALDYYCAMFESIDVTLERDRKERIN 494 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vE+++l+r+ivnv+aceg+er+erhe l+kW+ r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L+s+SaW XP_009788119.1 495 VEQHCLARDIVNVIACEGKERVERHELLGKWKLRFTMAGFRQYPLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582 *********************************************************9999.66************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.39 | 187 | 564 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-126 | 214 | 582 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MESHHLYGYG VTGANLSYSY SKAATTTPLP NRLLGTLKFE SRNSPNSPFA NYFDPDTPTT 60 LSDSLEQHRS TENISETSPS NSSLDYNHYF HRPSPSPNFR PNTLLVRSGE TSLLQYANHS 120 QNMKNALLQL ETALMGPEEE ATTSSPSAGD IKQPQTSGQR SRMWNQEDQI SRRIERQPSH 180 VSTFGISSSG IHSEKRHKAT EDLSLSGIPS GNLKPLLIAC ARALTENKLD DFGSLIAKAR 240 NAISITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM HILYEICPYL 300 KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV 360 SKYARGDGLA FVGKRLTDIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL 420 HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES 480 IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS 540 SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-63 | 217 | 583 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788119.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_009788120.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_016475625.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A1S4AG00 | 0.0 | A0A1S4AG00_TOBAC; scarecrow-like protein 21 | ||||
TrEMBL | A0A1U7XNQ0 | 0.0 | A0A1U7XNQ0_NICSY; scarecrow-like protein 21 | ||||
STRING | XP_009788119.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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