PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009787917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 421aa MW: 48075.5 Da PI: 8.4752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.9 | 4.8e-50 | 39 | 165 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF Ptdeel+++yLkkkveg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+s XP_009787917.1 39 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPdKSIVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNVKS 132 579************************777.99***************778888999************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+k+tLvf+ grapkg++t+W+mhey + XP_009787917.1 133 -GSNMIGTKRTLVFHMGRAPKGQRTQWIMHEYCM 165 .99*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-56 | 36 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.787 | 39 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 41 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MEDGNVSDEN KATKIVERSK NINGNDKNVE ISVATASTMF PGFRFCPTDE ELISYYLKKK 60 VEGSDKCVEV ISEVEIWKHE PWDLPDKSIV QSDNEWFFFS PRGRKYPNGS QSKRATESGY 120 WKATGKERNV KSGSNMIGTK RTLVFHMGRA PKGQRTQWIM HEYCMTGNTY YQDSVVVCRL 180 RKNNEFHLND THGNRRNHLA NDCATALSGA GQLDSLDLIN GGDCCSKEGS SSFSSHSVEK 240 IESGSESDKL TKELPQHHSS SHWKDCDEED CFADIMKDDI VKLDDSSYKE RHNLLPIVTR 300 KLESSTKSST QEFQDLMSHR LPFQGTANRR LRLQTEIVPR RVERSEVYEA NKKNSRAVGT 360 TRCLMINIIP IRRMKQWSIP LLLVFFALLV IFLCLFGVPQ KVKWLRHLVV ITPAEVNTRP 420 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-44 | 30 | 184 | 11 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-95 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787917.1 | 0.0 | PREDICTED: NAC domain-containing protein 89-like | ||||
TrEMBL | A0A1U7X741 | 0.0 | A0A1U7X741_NICSY; NAC domain-containing protein 89-like | ||||
STRING | XP_009787917.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 1e-82 | NAC domain containing protein 60 |