PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787900.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 350aa    MW: 39924.3 Da    PI: 8.0463
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.73e-401022502130
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...... 73 
                     a kkdrhski T+ g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+ el++                  s  + sec      
  XP_009787900.1 102 AYKKDRHSKINTAHGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKCAVNELVQGinkencatanigaistcS--TTSECevvsgi 194
                     679*************************************************************999998888887776432..33456555553 PP

             TCP  74 eaesssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekm 130
                     ++++  +   +++s++ +  ++ k +k  ++a +++ +akesr++arararert+ k+
  XP_009787900.1 195 DESTTTNDI-QKQSNRGKVGEKkKANKLVRRA-AFNPVAKESRKQARARARERTKIKK 250
                     223333333.3444444444441445555554.4899999**************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.218104162IPR017887Transcription factor TCP subgroup
PfamPF036345.5E-44104250IPR005333Transcription factor, TCP
PROSITE profilePS5137010.477232249IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MYPSSNSCNY SLNISSSNNL FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ QQQQQLLTTP  60
DHYMAADSNK DTVISSTNQD PEEVELQGRC KNKKGDNKRR VAYKKDRHSK INTAHGPRDR  120
RMRLSLDVAR KFFNLQDLLG FDKASKTVEW LLTKSKCAVN ELVQGINKEN CATANIGAIS  180
TCSTTSECEV VSGIDESTTT NDIQKQSNRG KVGEKKKANK LVRRAAFNPV AKESRKQARA  240
RARERTKIKK SFLNIGDQSM AADDLKRLGC WSLFETGEES GIQGTNHQIE EHTTHHEEPL  300
LGTNENVDDC NLVVTGNWNP YTIFNYHHST EISHEQQFTN FQFSGKFWEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1949530.0FJ194953.1 Nicotiana tabacum TCP1 protein-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787900.10.0PREDICTED: transcription factor TCP12-like
RefseqXP_016434825.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A1S3X4A50.0A0A1S3X4A5_TOBAC; transcription factor TCP12-like
TrEMBLA0A1U7XN350.0A0A1U7XN35_NICSY; transcription factor TCP12-like
STRINGXP_009787900.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-29TCP family protein