PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009787893.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 304aa MW: 32926.8 Da PI: 5.9882

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009787893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.2e-09	214	262	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe++v++L++e ++L +l l+ XP_009787893.1 214 KRAKRIWANRQSAARSKERKMRYIAELERRVQALQTEATSLSAQLTLLQ 262 9*****************************************9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-14	210	274	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	212	275	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-8	214	262	No hit	No description
Pfam	PF00170	8.8E-9	214	262	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-10	214	265	No hit	No description
CDD	cd14703	5.69E-24	215	264	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDKEKCVGGL LPPSGNYSLF LPSGSSYSVK SEPSGSSNLP PLGPVPASEL KANQFSHDIS 60 RMPDNPPKNL GHRRAHSEIL TLPDDISFDS DLGVVGGLDG PSLSDETEED FPSMYLDMDK 120 FNSSSATSSF QVGESSSGSL QAPAMGFTAS RTDNVTAAVS EKPRVRHQHS QSMDGSTIIK 180 PEMLMSGGED PSSAETKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYIAEL 240 ERRVQALQTE ATSLSAQLTL LQRDTNGLSA ENNELKLRLQ TMEQQVHLQD GKKLNMTSSS 300 LSEN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787893.1	0.0	PREDICTED: probable transcription factor PosF21 isoform X2
Swissprot	Q04088	1e-121	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1U7XAK3	0.0	A0A1U7XAK3_NICSY; probable transcription factor PosF21 isoform X2
STRING	XP_009787892.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-114	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]