PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787621.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 357aa    MW: 38996.6 Da    PI: 4.1019
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.49.1e-5820115297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyre+ege
  XP_009787621.1  20 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLAKYREMEGE 114
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_009787621.1 115 K 115
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-5515124IPR009072Histone-fold
SuperFamilySSF471131.18E-4022124IPR009072Histone-fold
PfamPF008081.7E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-205371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-207290No hitNo description
PRINTSPR006151.4E-2091109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MADSDNESGG HNAGNEGSTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEEYVEP LKIYLAKYRE MEGEKTTMGG  120
RPGGEKDGGG SGGNIIEDAY ILTRFHHGGT FIEQPVPLYK GELDAFAVAI DKDHFSVVEL  180
SAYAKDLGYA VVEGFYCQKE KDGDFIKVFS DFQLYEFVKD LKHSDILDVY LRHGVSQPEV  240
VEENVGLLCG AEVGGGGNDQ FKARATPGSN TNTEEPIEAP TEPTHNAAEP PIEPPIELTL  300
NDAEPTHNSS KPTVNAADGD EPPDHNVNED GVQSDVESSE SEEDVLPEED DSDVDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-4514110197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787621.10.0PREDICTED: uncharacterized protein LOC104235531
TrEMBLA0A1U7XD930.0A0A1U7XD93_NICSY; uncharacterized protein LOC104235531
STRINGXP_009787621.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-75nuclear factor Y, subunit B3