PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787611.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 90aa    MW: 10162.4 Da    PI: 6.6912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-0718571554
                    HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    +i +  ++L++llP+ +   +s K s + +L+++++YI+sL
  XP_009787611.1 18 QIIDLVSKLQQLLPEiR-TRRSSKASASKVLQETCNYIRSL 57
                    56677799*******77.799******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.937357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-8475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-71772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-51857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRRSRDSE SSRISDDQII DLVSKLQQLL PEIRTRRSSK ASASKVLQET CNYIRSLNRE  60
LDDLSDRLSQ LLSTVDADSP EAAIIRSLII
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787611.17e-54PREDICTED: transcription factor PRE1-like
RefseqXP_016453786.17e-54PREDICTED: transcription factor PRE1-like
SwissprotQ9LJX17e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1S3YNB32e-52A0A1S3YNB3_TOBAC; transcription factor PRE1-like
TrEMBLA0A1U7XD832e-52A0A1U7XD83_NICSY; transcription factor PRE1-like
STRINGXP_009787611.13e-53(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-12bHLH family protein