PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787136.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 425aa    MW: 46547.9 Da    PI: 5.077
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.2e-06344439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    ++C++++  +   +C++++  lC +C ++ H+       H++
  XP_009787136.1  3 PVCELCGVVRGVVYCKSDSARLCLQCDENVHSAnslsrrHSR 44
                    78*****999*********************65667777776 PP
2zf-B_box19.22.5e-064584338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCllee..Hkg..Ht 38
                      +C++++++++   C d +++lC +C  ++    g  H+
  XP_009787136.1 45 SLICDKCSSQPAVVRCMDEEMCLCGSCDWNQngCTGtgHR 84
                    679************************8766554335555 PP
3CCT62.11.7e-21369412144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RY+eK+k+R F K+irYesRKa+A++R RvKGrFvk+ 
  XP_009787136.1 369 RHEAKMRYNEKKKSRTFGKQIRYESRKARADTRRRVKGRFVKAG 412
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.5E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.001147IPR000315B-box-type zinc finger
CDDcd000214.91E-6347No hitNo description
CDDcd000210.006124773No hitNo description
PROSITE profilePS5101714.574369411IPR010402CCT domain
PfamPF062031.1E-16369411IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDPVCELCGV VRGVVYCKSD SARLCLQCDE NVHSANSLSR RHSRSLICDK CSSQPAVVRC  60
MDEEMCLCGS CDWNQNGCTG TGHRLKQLNP YNGSLSPTEF TRMLSEVLEI PVSNDTNFGS  120
FGTPCSSLSI NENSSLETKG NGGSLVANKL NELASNYKFD PWAIPSNLSY LTSYNRDPVP  180
VSEGSGLSKQ DCPIKDLGFQ EGDDLSKGVN FDDVTLSFDC GNYELLGSSQ QSHPIYSSED  240
KELDCLVMEK NSSVSGSNSH VETSLEATSS GPQEYMGLQA SQMAAAARST NLFQTMSATA  300
NCMLMDPSCN GSIGLPFLPA PIHSSMSLSL SNITGESSAT TDYQDCGLSP VFLNGEPWDL  360
NLEKSPQKRH EAKMRYNEKK KSRTFGKQIR YESRKARADT RRRVKGRFVK AGEAYDYDPS  420
ETKEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327011e-46AC232701.2 Solanum lycopersicum chromosome 05 clone C05HBa0031K11, complete sequence.
GenBankHG9755171e-46HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787133.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_009787134.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_009787135.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_009787136.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_016461866.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
TrEMBLA0A1S3ZBT10.0A0A1S3ZBT1_TOBAC; zinc finger protein CONSTANS-LIKE 12-like
TrEMBLA0A1U7X8F30.0A0A1U7X8F3_NICSY; zinc finger protein CONSTANS-LIKE 12-like isoform X1
STRINGXP_009787133.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.12e-95B-box type zinc finger protein with CCT domain