PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009787134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 425aa MW: 46547.9 Da PI: 5.077 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.4 | 9.2e-06 | 3 | 44 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C++++ + +C++++ lC +C ++ H+ H++ XP_009787134.1 3 PVCELCGVVRGVVYCKSDSARLCLQCDENVHSAnslsrrHSR 44 78*****999*********************65667777776 PP | |||||||
2 | zf-B_box | 19.2 | 2.5e-06 | 45 | 84 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCllee..Hkg..Ht 38 +C++++++++ C d +++lC +C ++ g H+ XP_009787134.1 45 SLICDKCSSQPAVVRCMDEEMCLCGSCDWNQngCTGtgHR 84 679************************8766554335555 PP | |||||||
3 | CCT | 62.1 | 1.7e-21 | 369 | 412 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RY+eK+k+R F K+irYesRKa+A++R RvKGrFvk+ XP_009787134.1 369 RHEAKMRYNEKKKSRTFGKQIRYESRKARADTRRRVKGRFVKAG 412 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.5E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.001 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.91E-6 | 3 | 47 | No hit | No description |
CDD | cd00021 | 0.00612 | 47 | 73 | No hit | No description |
PROSITE profile | PS51017 | 14.574 | 369 | 411 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-16 | 369 | 411 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MDPVCELCGV VRGVVYCKSD SARLCLQCDE NVHSANSLSR RHSRSLICDK CSSQPAVVRC 60 MDEEMCLCGS CDWNQNGCTG TGHRLKQLNP YNGSLSPTEF TRMLSEVLEI PVSNDTNFGS 120 FGTPCSSLSI NENSSLETKG NGGSLVANKL NELASNYKFD PWAIPSNLSY LTSYNRDPVP 180 VSEGSGLSKQ DCPIKDLGFQ EGDDLSKGVN FDDVTLSFDC GNYELLGSSQ QSHPIYSSED 240 KELDCLVMEK NSSVSGSNSH VETSLEATSS GPQEYMGLQA SQMAAAARST NLFQTMSATA 300 NCMLMDPSCN GSIGLPFLPA PIHSSMSLSL SNITGESSAT TDYQDCGLSP VFLNGEPWDL 360 NLEKSPQKRH EAKMRYNEKK KSRTFGKQIR YESRKARADT RRRVKGRFVK AGEAYDYDPS 420 ETKEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232701 | 1e-46 | AC232701.2 Solanum lycopersicum chromosome 05 clone C05HBa0031K11, complete sequence. | |||
GenBank | HG975517 | 1e-46 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787133.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
Refseq | XP_009787134.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
Refseq | XP_009787135.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
Refseq | XP_009787136.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
Refseq | XP_016461866.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like | ||||
TrEMBL | A0A1S3ZBT1 | 0.0 | A0A1S3ZBT1_TOBAC; zinc finger protein CONSTANS-LIKE 12-like | ||||
TrEMBL | A0A1U7X8F3 | 0.0 | A0A1U7X8F3_NICSY; zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
STRING | XP_009787133.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 2e-95 | B-box type zinc finger protein with CCT domain |