PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786892.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 528aa    MW: 57177.1 Da    PI: 7.7294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33235291259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  XP_009786892.1 235 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 291
                     8****************************************.***************8 PP
2WRKY106.61.3e-33414472159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+ +dpk+v++tYeg+Hnh+
  XP_009786892.1 414 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAPSDPKAVITTYEGKHNHD 472
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-30227293IPR003657WRKY domain
PROSITE profilePS5081123.984229293IPR003657WRKY domain
SuperFamilySSF1182902.22E-26233293IPR003657WRKY domain
SMARTSM007748.1E-38234292IPR003657WRKY domain
PfamPF031061.5E-25235291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37400474IPR003657WRKY domain
SuperFamilySSF1182907.19E-30406474IPR003657WRKY domain
PROSITE profilePS5081139.054409474IPR003657WRKY domain
SMARTSM007743.9E-40414473IPR003657WRKY domain
PfamPF031062.7E-26415472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAENEASSSR APMRPTITLP PRASVENLFM GGPGGISPGP MTLVSSFFSD PASEYPSFSQ  60
LLAGSMASPA AFSGQRQGFP PPPEMTVSIS KGKESGSGDM DFGFKQNRPS GLVITQSPMF  120
TIPAGLSPAR LLGSPLLFSP GQGPFGMSHQ QALAQVTAQA AHPQSQMHIQ PDYPSSSAAP  180
APSFSQFQSL TSNATANKQI PPPASDPNVM KEASEVSLSD QRSEPASSAV DKPADDGYNW  240
RKYGQKHVKG SEYPRSYYKC THPNCPVKKK VERSLDGQVT EIIYKGQHNH QPPQSSKRSK  300
ESGNPNGNYN LQGPSELSSE GVAGTLNNSK DSMPSYSLRM TDQESSQATH DQVSGTSEGE  360
EVGDTENLAD GNDERESKRR AIEVQTSEAA SSASHRAVAE PRIIVQTTSE VDLLDDGYRW  420
RKYGQKVVKG NPYPRSYYKC TSQGCNVRKH VERAPSDPKA VITTYEGKHN HDVPAARNSS  480
HNTTNNSVSQ MRPHNPVVDK QDATRRIGFS NNEQQPIALL RLKEEQVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-41235475878Probable WRKY transcription factor 4
2lex_A1e-41235475878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962990.0AF096299.1 Nicotiana tabacum DNA-binding protein 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786892.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-167WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1U7X4590.0A0A1U7X459_NICSY; probable WRKY transcription factor 4
STRINGXP_009786892.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-150WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]