PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009786845.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 375aa MW: 41158 Da PI: 7.7382

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009786845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.2	9.3e-08	52	86	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C CGn a+ C ++ C+ CC C+ hv XP_009786845.1 52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHV 86 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-5	54	87	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAAAASSPAL SNHSADSAPS PASATAAPTV TPAVVSSHPT INASKNLRGL NKPKCIKCGN 60 VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST EASHSGSHRG 120 AASLRQLSTN FAQFNNLQTP LRSRKPLTRK DAQLINEWRF MKLKEFRDSN IAAENEAFDR 180 YMQNVGLLEE VFAVNSAEDE KNEDGSTGDD NEATVNRLKL QLRSDPTRIE NTRKRMQYIV 240 DQGLRKLRKL ESGDNATDLS DLDALGKKKK TKSADAEWGV SFTDLIDKLN KARNEEDLKA 300 CWEMKFQLFN QNKKEKQAGS DNAEASIELS SKASVMPTMP SGNSPPKWFS TSTIDDEELL 360 RLNAQFDSLE DIEEL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAAAASSPAL SNHSADSAPS PASATAAPTV TPAVVSSHPT INASKNLRGL NKPKCIKCGN  60
VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST EASHSGSHRG  120
AASLRQLSTN FAQFNNLQTP LRSRKPLTRK DAQLINEWRF MKLKEFRDSN IAAENEAFDR  180
YMQNVGLLEE VFAVNSAEDE KNEDGSTGDD NEATVNRLKL QLRSDPTRIE NTRKRMQYIV  240
DQGLRKLRKL ESGDNATDLS DLDALGKKKK TKSADAEWGV SFTDLIDKLN KARNEEDLKA  300
CWEMKFQLFN QNKKEKQAGS DNAEASIELS SKASVMPTMP SGNSPPKWFS TSTIDDEELL  360
RLNAQFDSLE DIEEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786845.1	0.0	PREDICTED: uncharacterized protein LOC104234898 isoform X2
TrEMBL	A0A1U7XK30	0.0	A0A1U7XK30_NICSY; uncharacterized protein LOC104234898 isoform X2
STRING	XP_009786844.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	3e-92