PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009786799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 581aa MW: 63973.8 Da PI: 8.3705 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_009786799.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 212 89****************************996555555..89***********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_009786799.1 213 NGDLCVGIRRA 223 8999****997 PP | |||||||
2 | Auxin_resp | 110.9 | 1.3e-36 | 289 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Pra t+eF++k++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ XP_009786799.1 289 AASFAASGQPFEVIYYPRANTPEFCIKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMRWPDSPWRLLQ 372 677899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-38 | 113 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-29 | 115 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-21 | 121 | 222 | No hit | No description |
Pfam | PF02362 | 6.6E-22 | 122 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 122 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.6E-32 | 289 | 372 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 581 aa Download sequence Send to blast |
MITFMDPKDK VKEIDKCLDS QLWHACAGSM VQMPPISSKV FYFPQGHSEH ACGNVDFRSS 60 NIRIPSYIPC KVSAIKYMAD PETDEVFAKI RLIPVGRNEV ELDDDGVVGM NGSDNQDKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG 180 TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPA 240 GGNCMVPYGG FSSFLREDEN KLMRNGGNGN SSGNLMNRGK VKAESVIEAA SFAASGQPFE 300 VIYYPRANTP EFCIKASLVK SALQIRWCSG MRFKMPFETE DSSRISWFMG TISSVQVADP 360 MRWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKLRLPQHPD 420 FPLDGHHLPM PAFSGNHLLG PNSPFGCLPD NTPAGMQGAR HAQYGLSLSD IHLNKLHSSL 480 FHVGFPPLDQ AAAHPRPPNS PMIRKPCNSE NISCLLTMGN STQDTTKKSD IGKAPQLVLF 540 GQPILTEQQI SLSCSGDTVS TVRTGNSSSD GNADKIVRTK Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-81 | 8 | 393 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786799.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X2 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1U7XIL4 | 0.0 | A0A1U7XIL4_NICSY; Auxin response factor | ||||
STRING | XP_009786798.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|