PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786709.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 266aa    MW: 30159.2 Da    PI: 9.009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
   XP_009786709.1 14 KGAWTKEEDESLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding58.91.1e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
   XP_009786709.1  67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.072961IPR017930Myb domain
SMARTSM007173.5E-131363IPR001005SANT/Myb domain
SuperFamilySSF466892.22E-2913108IPR009057Homeodomain-like
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001678.18E-101661No hitNo description
PROSITE profilePS5129429.01762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2865116IPR009057Homeodomain-like
SMARTSM007171.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1667111IPR001005SANT/Myb domain
CDDcd001674.10E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRLPCCEKS HTNKGAWTKE EDESLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG  120
IDPTIHRAIN EPNTQKVTSI TFASGNYKDI EDEKMNIKAE FGTIKEDDIS SRPQCPDLNL  180
ELRISPPYQQ NQQKRALEQS NTGSWRTSPI CFKCNLGLKK SKDCSCSDSS NGNGCSSSRN  240
ISMNIAAYDF LGLKTNGLDY RTLETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786709.10.0PREDICTED: myb-related protein 308-like
SwissprotP813931e-113MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1U7XID00.0A0A1U7XID0_NICSY; myb-related protein 308-like
STRINGXP_009786709.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-101myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]