PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009786488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 653aa MW: 72764.2 Da PI: 6.5514 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 7.9e-23 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ ++++ + +l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_009786488.1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQQPPWQ--ELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99****************************975444444..8************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_009786488.1 218 NGELRVGVRR 227 999*****97 PP | |||||||
2 | Auxin_resp | 116.3 | 2.7e-38 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv + ++rWp+S+WrsLk XP_009786488.1 253 ASHAISTGTLFSVYYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGENTSSRWPDSEWRSLK 335 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-43 | 116 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-40 | 124 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-20 | 125 | 227 | No hit | No description |
Pfam | PF02362 | 1.1E-20 | 127 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-21 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-36 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-6 | 531 | 573 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.229 | 537 | 630 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.49E-13 | 539 | 614 | No hit | No description |
Pfam | PF02309 | 8.5E-7 | 582 | 628 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MAHLAANHFG GGAHPVAPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH 60 QGLDQQLPSF NLPAKILCKV MNIQLRAESE TDEVYAQITL LPELDQGEIT RPYPPLPEPQ 120 KCTVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ QPPWQELVAS DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI 240 SSHSMHLGVL ATASHAISTG TLFSVYYKPR TSQSEFIVSV NKYLEARNHK LSVGMRFKMR 300 FEGEEVPERR FSGTIVGVGE NTSSRWPDSE WRSLKVHWDE PSSILRPDRV SPWEIEPLVT 360 ATPTNTQPQR NKRARPSVLP SPVQELPALG MWKSPGDSPS SFPYCDPSRG RDLYASPKLS 420 AASGLGYGEN GSMPLSSKSM YWSSQSDTCT ESITTPASEK RPANGYRLFG IELLDRPTVD 480 EASPVAMPSA LVENQPAASL DVDSGNSEPS NPIPSVSCEP EKSSLRSPHE SQSKQIRSCT 540 KVHMQGKAVG RAVDLTRLDS YEDLLKKLEE MFEIEGELRD STKKWQVVYT DDEDDMMMVG 600 DDPWHEFCSM VRKIYVYTAE EAKKLSPKIK LPVDDVKPGK PVSGATVSNE EKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 358 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 358 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 358 | 3 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM061154 | 0.0 | HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786487.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_009786488.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_009786489.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_009786490.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_016445203.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Refseq | XP_016445204.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Refseq | XP_016445205.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Refseq | XP_016445206.1 | 0.0 | PREDICTED: auxin response factor 1-like | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1S3XZD6 | 0.0 | A0A1S3XZD6_TOBAC; Auxin response factor | ||||
TrEMBL | A0A1U7XJ41 | 0.0 | A0A1U7XJ41_NICSY; Auxin response factor | ||||
STRING | XP_009786487.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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