PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009786352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 32319.9 Da PI: 7.2008 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 6e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ XP_009786352.1 5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfaavlRSRSNVDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.948 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.58E-21 | 6 | 56 | No hit | No description |
SMART | SM00526 | 3.5E-9 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 18.749 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.16E-14 | 120 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-13 | 123 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 2.2E-8 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAAV LRSRSNVDLK DKWRNLHVMA 60 NGLGSRHQGR VVSKSVQPKQ RRDDNSLLVS TAVENDIEVL DPKPLASSGD ALEDVGCEKP 120 ICRLDDLILE AIAKLKEPHG SRRNAILSYI EEWYTAPPNF ERLLAANLKV LTDKGRLIKV 180 RHQYRIAPSR LSSGTKGGHL PFLMDGKEDS TMIEKNEIRI RTKAQVDVEL EQMKSMTAEE 240 AAAAAAQAVA DAEAAIAEAE RAARIAEAAE AEAEAKQCFH EVTLKALQHQ TIPV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786348.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_009786349.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_009786350.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_009786351.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_009786352.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 2e-67 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1U7X9L7 | 0.0 | A0A1U7X9L7_NICSY; telomere repeat-binding factor 1-like | ||||
STRING | XP_009786348.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 5e-69 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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