PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786203.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 501aa    MW: 55673.1 Da    PI: 8.5065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0593115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_009786203.1  93 FVCEICSKGFQRDQNLQLHRRGH 115
                     89*******************88 PP
2zf-C2H211.50.0009169191123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_009786203.1 169 WKCDKCSKIYAVQSDWKAHSKTC 191
                     58*****************9998 PP
3zf-C2H212.60.00042199217523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsrk+++++H   +
  XP_009786203.1 199 DCGTVFSRKDSFVTHRAFC 217
                     8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.0E-692115No hitNo description
Gene3DG3DSA:3.30.160.606.0E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03693115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88793115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355260134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-6164189No hitNo description
SMARTSM00355180169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MNQEKQIYHQ SNSGCFSLLE SSSVLSHQAA MFSDEASVSS TTRVPNLSPM PQIISNHQQP  60
QKIKKKRSLP GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK  120
LKQRNNKENR KKAYVCPEPT CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV  180
QSDWKAHSKT CGTREYRCDC GTVFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRTVVA  240
STTIPNSAAA TTESNFHLNQ SSPILFPFPT TNQRHFANPP PPPATVVTTH ISLNNPWDPQ  300
IPLNPNPTHH EENHNQMTHH PVPIKTESIH IPVSSSVPPF YQDHFFHKGS FSIPSPQLSA  360
TALLQKAATI GTTHSAVSHV NSTMAHLNRT SLGHVTPRIS PEDFLGFGSD NMSNTWQQES  420
ENLTRDFLGL TGDHDHDHES SANGNGRNGG LFVSYGGGRD GNGMDFQQTL YERDHSSVLK  480
HHQLGFGFAA AETASETWGN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35165229367Zinc finger protein JACKDAW
5b3h_F4e-35165229367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119131KLKQRNNKENRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786203.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_016477693.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1S4AMN40.0A0A1S4AMN4_TOBAC; protein indeterminate-domain 2-like
TrEMBLA0A1U7X5S40.0A0A1U7X5S4_NICSY; zinc finger protein NUTCRACKER-like
STRINGXP_009786203.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-112indeterminate(ID)-domain 12