PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786013.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 345aa    MW: 39793.8 Da    PI: 7.1091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-56231491128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL++kv +k++++  +++evd++k+ePwdLp+k+k +ekewyfF +rd+ky+tg r+nrat+sgyWkatgkdke+++ 
  XP_009786013.1  23 LPPGFRFHPTDEEIITCYLREKVMNKRFTA-IAVAEVDLNKSEPWDLPAKAKMGEKEWYFFWQRDRKYPTGMRTNRATESGYWKATGKDKEIYKV 116
                     79*************************999.88***************99999****************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     kg lvg+kktLvfykgrapkgekt+Wvmheyrl
  XP_009786013.1 117 KGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 149
                     *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-6221172IPR003441NAC domain
PROSITE profilePS5100559.29723171IPR003441NAC domain
PfamPF023655.7E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGTSMQVINQ EADMHRDDIL DQLPPGFRFH PTDEEIITCY LREKVMNKRF TAIAVAEVDL  60
NKSEPWDLPA KAKMGEKEWY FFWQRDRKYP TGMRTNRATE SGYWKATGKD KEIYKVKGCL  120
VGMKKTLVFY KGRAPKGEKT NWVMHEYRLH RKLSFHKPAM DEWVICKVFH KNIGIRRGSL  180
FMEDLLDSPS SLPCLIEIPK SSDVRDELNI KAATTTSTFD EIHSSAYFST GIFNNYAYEQ  240
PLLREDEKSY GLFVPTHYIF TGIHDYEHNN QLASSSNSSF NHDQSRPSNS KISDYSKNGT  300
ALERQQLSSN NMISLSQDTN EISSVIPKQG FDSNIAADLD SIWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53141726166NO APICAL MERISTEM PROTEIN
1ut4_B2e-53141726166NO APICAL MERISTEM PROTEIN
1ut7_A2e-53141726166NO APICAL MERISTEM PROTEIN
1ut7_B2e-53141726166NO APICAL MERISTEM PROTEIN
4dul_A2e-53141726166NAC domain-containing protein 19
4dul_B2e-53141726166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5102141e-124AF510214.1 Petunia x hybrida nam-like protein 17 (NH17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786013.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A1U7X5920.0A0A1U7X592_NICSY; protein CUP-SHAPED COTYLEDON 1-like
STRINGXP_009786013.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-95Arabidopsis NAC domain containing protein 87