PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 164aa MW: 19019.1 Da PI: 9.8217 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 106.8 | 3.5e-33 | 9 | 112 | 3 | 121 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 s +++CqdCGnqakkdC++ RCRtCC+srgf+C+th+kstW p++ rr r++ ++++s+ +++ + + +kr r ++++ XP_009785997.1 9 SSSSRCQDCGNQAKKDCTYLRCRTCCRSRGFHCQTHIKSTWAPVSTRRPRHHLHQQLSTIQQQLQaVPNPNKRYR----------------ENHE 87 56789********************************************97766665433322110122222222................2223 PP DUF702 97 kkeletsslPeevsseavfrcvrvs 121 + e ++P evs +avfrc+r+ XP_009785997.1 88 IQGEEEGDFPGEVSFPAVFRCIRLV 112 34556678***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.0E-35 | 11 | 112 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.4E-25 | 14 | 55 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MMKEVEGSSS SSRCQDCGNQ AKKDCTYLRC RTCCRSRGFH CQTHIKSTWA PVSTRRPRHH 60 LHQQLSTIQQ QLQAVPNPNK RYRENHEIQG EEEGDFPGEV SFPAVFRCIR LVKAAPFSSS 120 NLLFYLLLQP LVLLQHLLIP ILLVLSFLKY RIRLHIIDRY GSVR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785997.1 | 1e-119 | PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X4 | ||||
Swissprot | Q9SD40 | 3e-30 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1U7X1I0 | 1e-118 | A0A1U7X1I0_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X4 | ||||
STRING | XP_009785993.1 | 5e-79 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 3e-27 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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