PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 214aa MW: 24122.8 Da PI: 8.5564 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 170.6 | 7.9e-53 | 9 | 145 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 s +++CqdCGnqakkdC++ RCRtCC+srgf+C+th+kstW p++ rr r++ ++++s+ +++ + + +kr r ++++ XP_009785995.1 9 SSSSRCQDCGNQAKKDCTYLRCRTCCRSRGFHCQTHIKSTWAPVSTRRPRHHLHQQLSTIQQQLQaVPNPNKRYR----------------ENHE 87 56789********************************************97766665433322110122222222................2223 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + e ++P evs +avfrc+rvss+d+ +++aYqt+v+igGhvfkGiLydqG e+ XP_009785995.1 88 IQGEEEGDFPGEVSFPAVFRCIRVSSIDNVVDQYAYQTSVQIGGHVFKGILYDQGSEN 145 34556678***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-56 | 11 | 144 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.9E-25 | 14 | 55 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.5E-25 | 96 | 142 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MMKEVEGSSS SSRCQDCGNQ AKKDCTYLRC RTCCRSRGFH CQTHIKSTWA PVSTRRPRHH 60 LHQQLSTIQQ QLQAVPNPNK RYRENHEIQG EEEGDFPGEV SFPAVFRCIR VSSIDNVVDQ 120 YAYQTSVQIG GHVFKGILYD QGSENRYNNM AAGESSSFQQ QQPPILLTAA TTSTTAAPSY 180 PNPFSTFIPG YHHMGANKTN QYLYGVHASF KFYG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785995.1 | 1e-162 | PREDICTED: protein SHORT INTERNODES-like isoform X2 | ||||
Swissprot | Q9XGX0 | 4e-51 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A1U7XHQ2 | 1e-161 | A0A1U7XHQ2_NICSY; protein SHORT INTERNODES-like isoform X2 | ||||
STRING | XP_009785993.1 | 1e-141 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-47 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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