PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9925.98 Da PI: 8.9783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 10 | 54 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT+e + + +a + + ++ +W+ +ar +g g+t++++k ++ XP_009785808.1 10 GSWTAEQNKAFEKALAVYDKDtpdRWSNVARAVG-GKTAEEVKRHY 54 89********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.9E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 10 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.888 | 10 | 58 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.0E-8 | 10 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-14 | 10 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-8 | 11 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASSSMSFHG SWTAEQNKAF EKALAVYDKD TPDRWSNVAR AVGGKTAEEV KRHYEILVQD 60 VMSIENGRVP FPNYRTTTGG RTKTNTADN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-36 | 1 | 85 | 1 | 83 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785808.1 | 9e-62 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_016462488.1 | 9e-62 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 8e-37 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1S3ZDK1 | 2e-60 | A0A1S3ZDK1_TOBAC; protein RADIALIS-like 1 | ||||
TrEMBL | A0A1U7X4L8 | 2e-60 | A0A1U7X4L8_NICSY; protein RADIALIS-like 1 | ||||
STRING | XP_009785808.1 | 4e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-38 | RAD-like 6 |
Publications ? help Back to Top | |||
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