PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 87aa MW: 9283.98 Da PI: 8.1475 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48 | 2e-15 | 10 | 34 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_009785779.1 10 CGGCHTLLMYIRGATSVQCSCCHTV 34 ************************9 PP | |||||||
2 | zf-LSD1 | 42 | 1.6e-13 | 48 | 72 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C+++ XP_009785779.1 48 CGNCRMLLMYQYGARSVKCAVCNFM 72 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.4E-15 | 7 | 36 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 6.3E-4 | 7 | 70 | No hit | No description |
Pfam | PF06943 | 5.5E-13 | 10 | 34 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.2E-12 | 45 | 74 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.1E-13 | 48 | 71 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
TGTEMAQLVC GGCHTLLMYI RGATSVQCSC CHTVNLAMEA NQVAHVNCGN CRMLLMYQYG 60 ARSVKCAVCN FMTAVGVSIK FSLALSP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 9e-56 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785779.1 | 9e-58 | PREDICTED: protein LSD1-like, partial | ||||
Swissprot | Q0J7V9 | 9e-49 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A1U7XFQ3 | 2e-56 | A0A1U7XFQ3_NICSY; protein LSD1-like | ||||
STRING | XP_009785779.1 | 3e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-49 | lsd one like 1 |
Publications ? help Back to Top | |||
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