PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 356aa MW: 40490.9 Da PI: 5.3874 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.7e-30 | 133 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp ++eitY+g+H+++ XP_009785573.1 133 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGSHTCN 193 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-29 | 126 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 131 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-41 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-27 | 133 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.459 | 133 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MDCGFNWEYN SLINELIQGM EHTKQLRAYF SSTVSSDKIQ ELHLHMQIIL SSFENSLSIL 60 KWTDSITQTP QVVVAPPPSI SVDEISPKTD DLNGNFKDND QDLRYVSKKR KQLPTWTEQV 120 RVSAENGFEG PTDDGYSWRK YGQKDILGAK YPRSYYRCTY RLMQNCWATK QVQRSDDDPA 180 LFEITYKGSH TCNQAFNSAA QPTSPEKHEF KKQANNPKIV QSNQMLANLQ ANLRVNTNDL 240 NKKETTCSFP FSPTFSGFVD ENLHFQVSQV DDNLVGGYSP SFVSPTTPES SYFSLPSCQM 300 NGSRRIHSLH HSESDLPDLF SANTSSTSSP IVGLEFPLEH VELDPNFPFD NSEFFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-20 | 133 | 192 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 110 | LRYVSKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009295 | 1e-158 | AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence. | |||
GenBank | HG975520 | 1e-158 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785573.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
Refseq | XP_016494385.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1S4BZQ8 | 0.0 | A0A1S4BZQ8_TOBAC; probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1U7X3Y6 | 0.0 | A0A1U7X3Y6_NICSY; probable WRKY transcription factor 41 | ||||
STRING | XP_009785573.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 9e-58 | WRKY family protein |