PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785573.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 356aa    MW: 40490.9 Da    PI: 5.3874
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30133193259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp ++eitY+g+H+++
  XP_009785573.1 133 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGSHTCN 193
                     8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-29126194IPR003657WRKY domain
SuperFamilySSF1182902.35E-26131194IPR003657WRKY domain
SMARTSM007748.7E-41132194IPR003657WRKY domain
PfamPF031064.1E-27133192IPR003657WRKY domain
PROSITE profilePS5081121.459133195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDCGFNWEYN SLINELIQGM EHTKQLRAYF SSTVSSDKIQ ELHLHMQIIL SSFENSLSIL  60
KWTDSITQTP QVVVAPPPSI SVDEISPKTD DLNGNFKDND QDLRYVSKKR KQLPTWTEQV  120
RVSAENGFEG PTDDGYSWRK YGQKDILGAK YPRSYYRCTY RLMQNCWATK QVQRSDDDPA  180
LFEITYKGSH TCNQAFNSAA QPTSPEKHEF KKQANNPKIV QSNQMLANLQ ANLRVNTNDL  240
NKKETTCSFP FSPTFSGFVD ENLHFQVSQV DDNLVGGYSP SFVSPTTPES SYFSLPSCQM  300
NGSRRIHSLH HSESDLPDLF SANTSSTSSP IVGLEFPLEH VELDPNFPFD NSEFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20133192968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110LRYVSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092951e-158AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9755201e-158HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785573.10.0PREDICTED: probable WRKY transcription factor 41
RefseqXP_016494385.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S4BZQ80.0A0A1S4BZQ8_TOBAC; probable WRKY transcription factor 41
TrEMBLA0A1U7X3Y60.0A0A1U7X3Y6_NICSY; probable WRKY transcription factor 41
STRINGXP_009785573.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-58WRKY family protein