PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785489.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 28392 Da    PI: 7.0858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-1867116255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  XP_009785489.1  67 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAAIAIKG 116
                     69****888.**********843...6**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.37E-3366126No hitNo description
PfamPF008472.0E-1266116IPR001471AP2/ERF domain
PROSITE profilePS5103222.41867124IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2167125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-3167125IPR001471AP2/ERF domain
SMARTSM003809.4E-3767130IPR001471AP2/ERF domain
PRINTSPR003675.0E-106879IPR001471AP2/ERF domain
PRINTSPR003675.0E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEEKSLISNN INNQTTYSTI PHFFPSSSLS KRPTTLASSK QETNYKKTKC NDMNKKTKKI  60
DDLKHPIYHG VRKRSWGKWV SEIREPRKKS RIWLGTFATA EMAARAHDVA AIAIKGPLAL  120
LNFPELVHQF PKPASKCAKD IQAAATKAAA LNICSTNCIT EESQGELMEQ FSSEEIESRA  180
SSSSTSSLSC KNEDPFLDLP DLLLDLSQKF DKFCYYNSPW ELVGAESNDS NHSEFWSEDL  240
YLWDYNYGTV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17641241172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785489.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
RefseqXP_016492543.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S4BUP40.0A0A1S4BUP4_TOBAC; ethylene-responsive transcription factor ERF038-like
TrEMBLA0A1U7XEW20.0A0A1U7XEW2_NICSY; ethylene-responsive transcription factor ERF038-like
STRINGXP_009785489.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]