PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785472.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 366aa    MW: 41499.7 Da    PI: 7.324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++ q+G+g +W + + ++g++R++k+c++rw++yl
   XP_009785472.1 14 KGPWSPEEDAKLKSYIDQHGTGgSWIALPPKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding391.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd++++ +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_009785472.1  69 GGFSQEEDDIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.654962IPR017930Myb domain
SuperFamilySSF466891.34E-2511109IPR009057Homeodomain-like
SMARTSM007175.1E-111364IPR001005SANT/Myb domain
PfamPF002493.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-231569IPR009057Homeodomain-like
CDDcd001671.05E-71662No hitNo description
PROSITE profilePS5129421.52763117IPR017930Myb domain
SMARTSM007171.1E-1167115IPR001005SANT/Myb domain
PfamPF002495.4E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
CDDcd001672.15E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPCCDKN SVKKGPWSPE EDAKLKSYID QHGTGGSWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSQEEDDIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QRKNLRGKSQ KQGSRKGRDQ MNSSMDSHNN IDTNPSWSEF PILQPIPYSN DEPRYNNDHT  180
SIRKLLMKLG GNFYEDDDKP MNGALNPQYD PMDNSLMHPV YHNSINLISS APMVVMNTSP  240
FTNSHEYNVD GKAVCWVDTD AEKRKLGERM GSDTSVARAL NDGCNSTTEL EHMVYTNPQK  300
LDDLEMLYED MLNNKPATTL GGSLHWEDMN NLVFPFPPLV VSNNEGHQHG TLLEEGALNE  360
PRYPRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785472.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A1U7WZZ40.0A0A1U7WZZ4_NICSY; transcription factor RAX1-like
STRINGXP_009785472.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-71myb domain protein 36